Presentations and Authors


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Symposium 01A: Semantics for Biodiversity Science: Challenges & Solutions

Towards the next-generation ABCD
Anton Güntsch, David Fichtmüller, Mareike Petersen, Jana Hoffmann, Jörg Holetschek, Gabi Droege
The Open Biodiversity Knowledge Management System: A Semantic Suite Running on top of the Biodiversity Knowledge Graph
Viktor Senderov, Teodor Georgiev, Donat Agosti, Terry Catapano, Guido Sautter, Éamonn Ó Tuama, Nico Franz, Kiril Simov, Lyubomir Penev

Symposium 01B: Semantics for Biodiversity Science: Text mining & semantic role tagging

Understanding mass flowering of dipterocarps through semantic occurrence information extraction
Roselyn Santos Gabud, Riza Theresa Batista-Navarro, Vladimir Mariano, Eduardo Mendoza, Sandra Yap

Symposium 01C: Semantics for Biodiversity Science: Taxon names & Traits

Creature Features: A semantic toolkit for biodiversity trait data
Rob Penn Guralnick, Ramona Walls, John Wieczorek, John Deck, Paula Zermoglio, David Bloom, Laura Russell, Raphael LaFrance

Symposium 01D: Semantics for Biodiversity Science: Integration & Ecology

Semantics to standardise the interpretation of flower-visiting data
Willem Coetzer, Deshendran Moodley, Aurona Gerber
An Introduction to the Plant Phenology Ontology
Brian J. Stucky, Ramona L. Walls, Kjell Bolmgren, John Deck, Ellen G. Denny, Robert P. Guralnick

Symposium 03: Interoperability and Data Provenance for Online Crowdsourcing of Biodiversity Specimens

Worldwide Engagement for Digitizing Biocollections (WeDigBio)—Our Biocollections Community's Citizen Science Space on the Calendar
Elizabeth Ellwood, Paul Kimberly, Simon Chagnoux, Paul Flemons, Edward Gilbert, Robert Guralnick, Kevin Love, Austin Mast
SERNEC collaborative georeferencing; leveraging the interoperability between GEOLocate and Symbiota for a large scale digitization project.
M W Denslow, H Brown, E Gilbert, N Rios, Z E Murrell
Notes from Nature 2.0: Standardization for citizen science at scale
Rob Penn Guralnick

Symposium 04: Using Data Visualisation for Sustainable Biodiversity: Knowledge and Insights from Heterogeneous Data

Results of IndexMed GRAIL Days 2016: How to use standards to build GRAphs and mIne data for environmentaL research
Romain David, Jean-Pierre Féral, Anne-Sophie Archambeau, David Auber, Nicolas Bailly, Cyrille Blanpain, Vincent Breton, Alrick Dias, Anna Cohen-Nabeiro, Aurélie Delavaud, Sophie Gachet, Robin Goffaux, Karina Gibert, Manuel Herrera, Dino Ienco, Romain Julliard, Julien Lecubin, Yannick Legre, Grégoire Loïs, Victor Méndez Muñoz, Jean-Charles Meunier, Isabelle Mougenot, Sophie Pamerlon, Geneviève Romier, Alison Specht, Christian Surace, Thierry Tatoni
Discussion: Application of Data Visualisation for Sustainable Biodiversity: Deriving Useful Knowledge and Insights from Heterogeneous Data
Jitendra Gaikwad, Pawandeep Kaur, Friederike Klan

Symposium 05: Big Data Analysis Methods and Techniques as Applied to Biocollections

Large-scale Evaluation of Multimedia Analysis Techniques for the Monitoring of Biodiversity
Alexis Joly, Hervé Goeau, Pierre Bonnet

Symposium 06B: Biodiversity Data Quality – issues, methods, and tools

AnnoSys – Improving Data Quality by annotating virtual Specimens
Walter Berendsohn, Okka Tschoepe, Lutz Suhrbier, Anton Güntsch
Why you must clean your big-data
Tomer Gueta, Yohay Carmel
Quasi-F – An Infrastructure for the Quality Assurance of Citizen Science Data in Germany
Falko Glöckler

Symposium 10: Citizen Science for Biodiversity Research

Citizen science and expert community interactions using Wikwio, a weed knowledge portal, focused on southern Africa
Balasubramanian Dhandapani, Thomas le Bourgeois, Pierre Grard, Pascal Marnotte, Azaad Guangoo, Alain Paul Andrianaivo, Jean Augustin Randriamampianina, Yahaya Ibrahim, Prabhakar R, Thomas Vattakkaven, Sathish M, Karthik Yeruva
Potential of mobile search logs in citizen science context for biodiversity monitoring
Pierre Bonnet, Alexis Joly, Hervé Goëau, Samuel Dufour-Kowalski, Jean-Christophe Lombardo, Antoine Affouard, Nozha Boujemaa, Jean-françois Molino, Daniel Barthélémy

Symposium 12: Globally Unique Identifiers for Names

Utilizing Unique Identifiers for Taxonomic Concepts
Jeff Gerbracht

Symposium 13: DNA-based species and taxon occurrences

Streamlining the Flow of Taxon Occurrence Data Between a Manuscript and Biological Databases
Viktor Senderov, Teodor Georgiev, Lyubomir Penev

Workshop 01: Towards Best Practices for the Implementation and Documentation of Biodiversity Informatics Services

Towards Best Practices for the Implementation and Documentation of Biodiversity Informatics Services
Anton Güntsch, James Macklin, Paul J. Morris

Workshop 03A: Darwin Core Invasive Species Extension Hackathon: six schemas for GitHub

W03A: Darwin Core Invasive Species Extension Hackathon: Six schemas for GitHub
Annie Simpson, Catherine S Jarnevich, Jim Graham

Workshop 03B: Darwin Core Invasive Species Extension Hackathon: Six schemas for GitHub

W03B: Darwin Core Invasive Species Extension Hackathon: Six schemas for GitHub
Annie Simpson, Catherine S Jarnevich, Jim Graham

Workshop 03C: Darwin Core Invasive Species Extension Hackathon: Six schemas for GitHub

W03C: Darwin Core Invasive Species Extension Hackathon: Six schemas for GitHub
Annie Simpson, Catherine S. Jarnevich, Jim Graham

Workshop 06A: Darwin Core: Tutorials, best practices, current issues, future directions

Darwin Core Documentation: More (would be) Better
Paula F. Zermoglio, David Bloom, John R. Wieczorek, Robert P. Guralnick, Raphael LaFrance, Laura Russell

Workshop 06B: Darwin Core: Tutorials, best practices, current issues, future directions

Proposed changes to Darwin Core to improve the flow of alien species data
Quentin John Groom, Peter Desmet

Workshop 08: New approaches and tools in Open Data publishing for biodiversity

Next Generation Publishing for Biodiversity using Pensoft's Arpha Writing Tool and Publishing System
Lyubomir Penev, Viktor Senderov, Teodor Georgiev
Novel article formats in the ARPHA* Writing Tool and Biodiversity Data Journal
Teodor Georgiev, Viktor Senderov, Lyubomir Penev
Online Import of Occurrence Records into Manuscripts from Taxonomic Databases using Pensoft’s ARPHA* Writing Tool
Viktor Senderov, Teodor Georgiev, Lyubomir Penev
Creation of Data Paper Manuscripts from Ecological Metadata Language (EML)
Viktor Senderov, Teodor Georgiev, Lyubomir Penev

Contributed 01: Past and Future

Nanopublications for biodiversity: concept, formats and implementation
Lyubomir Penev, Éamonn Ó Tuama, Viktor Senderov, Pavel Stoev, Teodor Georgiev
Building Linked Open Data for Zooarchaeological Specimens and Their Context
Laura Brenskelle, Rob Penn Guralnick, John Wieczorek
Demonstrating the Prototype of the Open Biodiversity Knowledge Management System
Viktor Senderov, Teodor Georgiev, Lyubomir Penev

Contributed 02: Inventories

Applying TDWG Standards to assess the Ecosystem Value of UNESCO Man and Biosphere Reserves in Africa.
Patricia Mergen, Hans Beeckman, Claire Delvaux, Doriane Desclee, Baudouin Michel, Quentin Groom, Steven Janssens, Henry Engledow, Piet Stoffelen, Filp Vandelook, Jérôme Degreef, André De Kesel, Hidvég Franck, Christine Cocquyt, Steven Dessein, Trefon Théodore, Smirnova Larissa, Cédric Vermeulen, Pascal Boeckx, Hans Verbeeck, Noéline Raondry Rakotoarisoa
CANCELLED: Completeness of Digital Accessible Knowledge of the plants of Benin and priorities for future inventory and data discovery
Jean Cossi GANGLO

Contributed 03: Plinean Core, Taxon Traits

An open participatory species traits infrastructure to organize and discover species information.
Prabhakar Rajagopal, Thomas Vattakaven, Pierre Grad, Thomas Le Bourgeois, Balasubramanian D, Sathish M, Maheswaran T, Sandeep Tandekar, Sravanthi M
Mamut: An online web editor to manage biological information of taxa based on the Plinian Core
Maria Fernanda Cubillos, Leonardo Buitrago, Oscar Duque, Nestor Beltran, Camila Plata, Marcela Delgado, Valerie Dean, Valentina Grajales, Daniel Amariles, Dairo Escobar

Contributed 04: Catalogs, Checklists, & Collections

Concept relations in practical use: Taxonomic checklists in the context of Red Lists of endangered species
Patrick Plitzner, Andreas Müller, Anton Güntsch, Walter Berendsohn
The BioCASe Monitor Service 2 – New Features for Monitoring Progress and Quality of Data Provision through Distributed Data Networks
Thomas Pfuhl, Falko Glöckler, Jana Hoffmann

Contributed 05: Data Gaps, Trust, Acquisition, Access

Exploring Data Gaps at the Species Level: Starting with demographic knowledge
Dalia A. Conde, Johanna Stärk, Fernando Colchero, Rita Silva, Jonas Schöley, Hassan Syed, Eelke Jongejans, Lionel Jouvet, Maria Baden, Shai Meiri, Jean-Michel Gaillard, Scott Chamberlain, Ulrich Steiner, Owen R. Jones, Johan Dahlgren, John E. Fa, Zjef Pereboom, Ivan Gomez-Mestre, Jean-Dominique Lebreton, Jaime Gonzalez Vargas, Kristen Luis, Lucie Bland, Alexander Scheuerlein, Vladimir Canudas-Romo, Jonathan Wilcken, Roberto Salguero-Gomez, Sebastien Devillard, Dmitry Schigel, Hugh Possingham, Annette Baudisch

Posters

Management and publication of an integrative and comprehensive scheme for meta-omics data of collection objects (MOD-CO)
Pelin Yilmaz, Anton Link, Tanja Weibulat, Frank Oliver Glöckner, Dagmar Triebel, Gerhard Rambold
German Federation for Biological Data (GFBio)
Michaeal Diepenbroek, Katrin Böhning-Gaese, Frank Oliver Glöckner, Anton Güntsch, Robert Huber, Birgitta König-Ries, Jens Nieschulze, Bernhard Seeger, Dagmar Triebel, Christian Wirth
Annotating Scientific Collection data using AnnoSys – A Generic Online Annotation System and Repository
Okka Tschöpe, Lutz Suhrbier, Anton Güntsch, Walter G. Berendsohn
Ontology-driven taxonomic workflows for Afrotropical Bees
Aurona Gerber
DOE! Mass digitisation of the BR Herbarium at Botanic Garden Meise
Sofie De Smedt, Ann Bogaerts, Piet Stoffelen, Quentin Groom, Henry Riley Engledow, Marc Sosef, Paul Van Wambeke, Steven Dessein

Lightning Talks

Examining citizen scientist engagement and transcription rates through site content and social media activity on the Notes from Nature platform
Michael W. Denslow, Julie Allen, Rob P Guralnick
Toward a new data standard for combined marine biological and environmental datasets - expanding OBIS beyond species occurrences.
Pieter Provoost, Daphnis De Pooter, Ward Appeltans, Sky Bristol, Philip Goldstein, Gwenaëlle Moncoiffé, Leen Vandepitte, Francisco Hernandez
Updates on multiple Neotropical Symbiota portals - STRI, Flora, and Arthropods
Nico Franz, Edward Gilbert, Benjamin Brandt, Rachel Collin


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