General Papers
| Towards a data citation metric | |
| Edward Baker |
| The use of optical character recognition (OCR) in the digitisation of herbarium specimens | |
| Elspeth M Haston, Robyn E Drinkwater, Robert Cubey |
| Online Annotation of Biodiversity Data – the AnnoSys Approach | |
| Okka Tschoepe, Lutz Suhrbier, Anton Güntsch, Walter G. Berendsohn |
| Hands-On AnnoSys – Managing Annotations Online | |
| Lutz Suhrbier, Okka Tschöpe |
| Perspectives for better conservation of diversity information in microalgae communities in Burkina Faso | |
| Bilassé ZONGO |
| eMonocot - A successful virtual community | |
| Annapaola Santarsiero, Benjamin Clark, Joseph Kelly, Charles Godfray |
| Using ElasticSearch as a fast, flexible, and scalable solution to search occurrence records and checklists | |
| Christian Gendreau, Marie-Elise Lecoq, David P. Shorthouse, Luc Brouillet |
| FOBioS: a functional ontology for biodiversity standards interoperability | |
| Silvia Scheunemann, Fabiana Soares Santana, Anarosa Alves Franco Brandao |
| Assisted restructure of web content for paper-based presentation: a look at work flows and data representations | |
| Alice Heaton, Simon Rycroft, Ed Baker, Katherine Bouton, Ben Scott, Koureas Dimitris, Laurence Livermore, Dave Roberts, Vince Smith |
| Xper3: Introducing Social Taxonomy | |
| Thomas Burguiere, Florian Causse, Antoine Bergamaschi, Nils Paulhe, Anais Grand, Frederic Lison, Visotheary Ung, Regine Vignes-Lebbe |
| The French standard "Occurrence of taxon" : issues, organization and results | |
| Julie Chataigner, Laurent Poncet, Marie-Elise Lecoq, Anne-Sophie Archambeau, Thierry Bourgoin |
| Towards a Collaborative Virtual Arctic Lichen Flora Project | |
| Thomas Hawkes Nash III, Corinna Gries, Edward Gilbert, Benjamin Brandt, Alfonso Doucette, Mark Allen Wetter, Ken M Cameron |
| A taxonomist's guide to Homo sapiens computans | |
| David King |
| BIH 2013: a goal to unite communities | |
| Alex Hardisty, Dave Roberts |
| The Natural History Museum Data Portal | |
| Ben Scott |
| Microbial Biodiversity Conservation : Not to be Ignored | |
| Anurag Chaurasia |
| Bibliography of Life (RefBank and ReFinder): A tool to discover, download, correct, and format bibliographic references | |
| Guido Sautter, Jordan Biserkov |
| iDigBio Data Integration with Self-Referential Schemas | |
| Sarfaraz Ahmed Soomro, Andrea Matsunaga, José A. B. Fortes |
| Pensoft Writing Tool (PWT) and Biodiversity Data Journal (BDJ) integrate data and narrative (text) publishing | |
| Teodor Georgiev, Jordan Biserkov, Lyubomir Penev |
| Natural History collections as valuable sources of biodiversity data; solution by MUSEION | |
| Jiri Frank, Pavel Mlcoch |
| Coupling phenotype descriptions and phylogenetic trees: from SDD to ontologies via graph databases | |
| Anaïs Grand, Régine Vignes Lebbe, Eduardo Miranda, André Santanchè |
| A decadal view of biodiversity informatics: challenges and priorities | |
| Alex Hardisty, Dave Roberts |
| Streamlining material- and data flow within the German Barcode of Life Project, GBOL | |
| Christian Köhler, Peter Grobe |
| Miss the forest for the trees: bringing together multiple classifications | |
| Heimo Rainer, Wolfgang Koller |
| Crowd sourcing in an attention economy | |
| Olivier Rovellotti, Julie Chabalier, Amandine Sahl |
| DiversityMobile as part of the Diversity Workbench platform – a data pipeline from smartphone recording up to GBIF access | |
| Tanja Weibulat, Georg Rollinger, Wolfgang Reichert, Markus Weiss, Dieter Neubacher, Bernhard Volz, Gerhard Rambold, Dagmar Triebel |
| Encyclopedia of Life TraitBank demonstration | |
| Cyndy Parr |
| Linnaeus Next Generation for species information and identification | |
| Wouter Addink, Maarten Schermer, Ruud Altenburg, Huub Veldhuijzen, Edwin van Spronsen, Peter Schalk |
| Lost in annotation? A publish-subscribe extension for Semantic MediaWiki vocabulary management system | |
| Julie Chabalier, Amandine Sahl, Olivier Rovellotti |
| ViBRANT: progress towards an integrated framework | |
| Vince Smith, Dave Roberts |
| SeaIce: a Cross-Domain Crowd-Sourced Metadata Vocabulary | |
| John Kunze, Jane Greenberg, Sarah Callaghan, Robert Guralnick, Greg Janee, Angela Murillo, Nassib Nassar, Christopher Patton, Karthik Ram, Jim Regetz, Tim Robertson |
| From archives to apps, the story of VertNet | |
| Aaron Steele, John Wieczorek |
| Cybertaxonomy and revisionary systematics | |
| Dmitry Dmitriev |
Keynote Speakers
| Web services and workflows: The Digital Observatory of Protected Areas | |
| Andrew Cottam, Gregoire Dubois |
Posters
| Bibliography of Life: Comprehensive services for biodiversity bibliographic references | |
| David King, Guido Sautter, David Morse, Lyubomir Penev, Jordan Biserkov, Teodor Georgiev, Dave Roberts, Vince Smith |
| PlutoF – multifunctional workbench for taxonomical and ecological research, biodiversity data collection and analysis | |
| Kessy Abarenkov, Urmas Kõljalg, Marko Peterson, Siim Halapuu, Janno Jõgeva, Karl Ranna, Henrik Nilsson |
| eBiodiversity – web portal for Estonian biodiversity data | |
| Marko Peterson, Urmas Kõljalg, Kessy Abarenkov, Veljo Runnel, Siim Halapuu, Janno Jõgeva, Karl Ranna |
| iDigBio as a Resource for the Digitization of a Billion Biodiversity Research Specimens | |
| Deborah Paul, Austin R Mast, Greg Riccardi, Gil Nelson |
| Practical Use and Database Quality Control of the Korea National Biospecies Information System | |
| Sangyong KIM, Jae-Hyeun KIM, You-Mi LEE, Joon-Hwan SHIN |
| Afromoths: An online database of Afrotropical moth species | |
| Nicolas Noé, André Heughebaert, Jurate De Prins |
| Enhancing Data Quality using AnnoSys – An Annotation System for Biodiversity Data | |
| Lutz Suhrbier, Okka Tschöpe |
| From Dendrœca blackburniæ to Dendrceca blackburniae: what's in a name? | |
| David King |
| Agora 3D: Evaluating the Digitisation of Scientific Collections | |
| Jonathan Brecko, Mathys Aurore, Patricia Mergen, Emmanuel Gilissen, Franck Theeten, Chris Vastenhoud, Erik Buelincks |
| #biobr – Citizen Science from social network | |
| Etienne Americo Cartolano, Antonio Mauro Saraiva, Allan Koch Veiga |
| Fauna Europaea; all European animal species on the web | |
| Yde de Jong, Florian Wetzel, Falko Gloeckler, Alexander Kroupa, Andreas Kohlbecker, Andreas Müller, Anton Guentsch, Gregor Hagendorn, Christoph Haueser |
| PaleoCore: An ontology and data standard for paleoanthropology | |
| Denne Reed |
| The Catalogue of Life Virtual Community | |
| Peter Schalk, Wouter Addink, Yuri Roskov |
| Lets talk: technical infrastructure and workflows for the OpenUp! Common Names Service | |
| Wolfgang Koller, Heimo Rainer |
| FADA: Freshwater Animal Diversity Assessment | |
| Aaike De Wever, Hendrik Segers, Koen Martens |
| agINFRA - where agriculture, biodiversity and information technology meet | |
| David Morse, Jane Bromley, David King |
| Linking taxon names with DNA-based species | |
| Urmas Kõljalg |
| Plinian Core: integrating information about species | |
| Santiago Martínez de la Riva, Carmen Quesada, Francisco Pando de la Hoz, Bárbara Ayala-Orozco, Ángela M. Suárez-Mayorga, María Mora, Danny Vélez, Jose Trinidad Mendoza Gaytan, Daniel Lins da Silva, Patricia Koleff, Maria Esther Quintero Rivero, Aurelio Sanabria |
| A strategy for integration of big (phenotype) data | |
| Suzanna Lewis, Paula Mabee, Andy Deans, Eva Huala, Chris Mungall |
| Xper3: Introducing Social Taxonomy | |
| Thomas Burguiere, Florian Causse, Antoine Bergamaschi, Nils Paulhe, Anais Grand, Frederic Lison, Visotheary Ung, Regine Vignes-Lebbe |
| Lets talk: accessing scientific content through their vernacular names representations | |
| Heimo Rainer, Wolfgang Koller |
| Building a mass-digitisation service infrastructure and user communities | |
| Hannu Saarenmaa, Tero Mononen, Janne Karppinen, Mira Sääskilahti, Riitta Tegelberg |
| BioFresh: building a collaborative global freshwater biodiversity data hub | |
| Aaike De Wever, Astrid Schmidt-Kloiber, Nicolas Bailly, Vanessa Bremerich, Paul Jepson, Jörg Freyhof, Koen Martens, Klement Tockner |
| ComTax: Community-driven Curation for Taxonomic Databases | |
| David Morse, Hui Yang, Alistair Willis, Anne de Roeck, David King |
| M-EOL: biodiversity awareness for gamers | |
| Julie Chabalier, Céline Vidal, Amandine Sahl, Olivier Rovellotti |
| The DINA-Specify Consortium | |
| Fredrik Ronquist, Markus Englund, Karin Karlsson, Kevin Holston, Ida Li |
| A High Volume Media Library using TDWG Audubon Core | |
| Wouter Addink, Ayco Holleman, Adrie Berg, Joost van Leusen, Atze de Vries, David Heijkamp |
| Biodiversity Network of the Humboldt-Ring (BiNHum): Access to high-quality object data, extension of established database systems and set-up of a joint data portal | |
| Joerg Lange, Joachim Holstein, Anita Roth-Nebelsick, Christopher Traiser, Florian Raub, Hubert Höfer, Klaus Riede, Peter Grobe, Maik Röder, Christian Köhler, Anton Güntsch, Gabriele Dröge, Patricia Kelbert, Dagmar Triebel, Anton Link, Markus Weiss, Dieter Neubacher, Tanja Weibulat |
| Biodiversity Vocabulary Management at BCO-DMO | |
| Nancy J. Copley, M. Dickson Allison, Robert C. Groman, Cynthia L. Chandler, Peter H. Wiebe, David M. Glover |
| Miss the forest for the trees: technical infrastructure for handling multiple classifications | |
| Wolfgang Koller, Heimo Rainer |
| Anymals + plants – Biodiversity in your pocket | |
| Falko Glöckler, Alexander Krupa, Daniel Zitterbart, M. Uher, Tom Uher |
Interest Group
| Annotations Interest Group | |
| Paul J Morris |
| Biological Descriptions & Identification methods | |
| Gregor Hagedorn |
| Semantics4Biodiversity | |
| Elizabeth Arnaud |
| Genomic Biodiversity Working Interest Group (GBWG) | |
| John Deck |
| The Economic Botany data collection standard | |
| Nicky Nicolson |
| Species Information Interest Group - Approved! | |
| Francisco Pando |
| Image Interest Group, Multimedia Resources Task Group (MRTG) Report and Discussion | |
| Robert A Morris |
Symposium: Empowering International e-Collaboration for Sustainability
| Long Live the Data | |
| Eric T. Meyer |
| Introduction: Empowering International eCollaboration for Sustainability | |
| Deborah Paul, Gail Kampmeier, Reed Beaman |
| Strategies and partnerships for enabling infrastructure sustainability | |
| Anne Maglia |
| Expanding and Sustaining Sub-Saharan African Participation and Collaboration with TDWG | |
| Henry L. Bart, Patricia Mergen |
| Use it or lose it: Crowdsourcing support and outreach activities in a hybrid sustainability model for e-infrastructures – The ViBRANT project case studies | |
| Dimitrios Koureas, Laurence Livermore, Dave Roberts, Vincent Smith |
| Success in broadening participation and engagement in digitization | |
| Deborah Paul |
| Building sustainable biodiversity information systems | |
| Fredrik Ronquist |
| Potential Refinement of the BARCODE Data Standard for Forensic Application: The Barcode of Wildlife Project | |
| David E. Schindel |
| We can foster collaboration and improve the results of biodiversity informatics | |
| Antonio Mauro Saraiva |
| Creating a semantic framework for cultivated plants for the international e-collaboration on agrobiodiversity | |
| Elizabeth Arnaud, Luca Matteis, Pankaj Jaiwal, Laurel Cooper, Selim Louafi, Pierre Larmande, Caterina Caraciolo, Johannes Keizer, Richard Bruskiewich |
| NEON’s collections program: Developing a collaborative network of museums and a resource in support of biodiversity research | |
| Michael W. Denslow |
| Panel Discussion: Empowering International eCollaboration for Sustainability | |
| Reed S. Beaman, Deborah Paul, Gail Kampmeier |
| The elements of collaboration in TDWG | |
| Stanley Blum |
Symposium Biodiversity informatics services and workflows
| Provenance in Scientific Workflows: Challenges and Opportunities for Biodiversity Informatics | |
| Bertram Ludaescher, Paolo Missier, David Lowery, Tianhong Song, Maureen Kelly, Sven Koehler, James Macklin, Paul Morris, Robert Morris, James Hanken |
| Providing Statistical Algorithms as-a-Service | |
| Gianpaolo Coro, Pasquale Pagano, Leonardo Candela |
| Biodiversity Informatics Services: Fit for Use? | |
| Cherian Mathew |
| Improving Natural Science Collections Data through Quality Control for Research using Workflows Embedded in a FilteredPush network | |
| James A Macklin, James Hanken, Maureen Kelly, Sven Koehler, David B Lowery, Bertram Ludaescher, Paul J Morris, Robert A Morris, Tianhong Song |
| Using the Taverna Workflow Tool Suite for Biodiversity Research in the BioVeL Project. | |
| Norman Morrison |
Symposium: Big Data coming from Earth Observation Networks
| GBIF's Role in the Earth Observation System | |
| Tim Robertson, Éamonn Ó Tuama |
| The Common Infrastructure of the Global Earth Observation System of Systems (GEOSS) applying a brokering approach | |
| Stefano Nativi, Max Graglia |
| Establishing a Systems Infrastructure for GEO BON | |
| Wim Hugo |
| The GEOSS Brokering System | |
| Paolo Mazzetti, Stefano Nativi, Mattia Santoro, Fabrizio Papeschi |
| Integrating observation and survey data for production of essential biodiversity variables – the EU BON approach | |
| Hannu Saarenmaa |
| Integrated Digitized Biocollections (iDigBio) Cyberinfrastructure Status and Futures | |
| Andréa Matsunaga, Renato Figueiredo, Alex Thompson, Gregory Traub, Reed Beaman, José A. B. Fortes |
Symposium: Biodiversity Data Quality – issues, methods and tools
| Biodiversity Data: Domains, richness, uses and Data Quality dimensions | |
| Arthur Chapman |
| Data Quality processes used in the Atlas of Living Australia | |
| Paul Kenneth Flemons |
| Documenting data quality in a global network: the challenge for GBIF | |
| Éamonn Ó Tuama, Andrea Hahn, Samy Gaiji |
| Data quality challenges in the Canadensys network of occurrence records: examples, tools, and solutions | |
| Christian Gendreau, David P. Shorthouse, Peter Desmet |
| The Data Quality Initiative at the Botanic Garden and Botanical Museum Berlin-Dahlem | |
| David Fichtmueller |
| VESpeR - Visual Exploration of Species-referenced Repositories | |
| Martin Graham, Jessie Kennedy |
| A Data Quality Management Module for BExIS | |
| Michael Owonibi, Roman Gerlach, Andreas Ostrowski, Eleonora Petzold, Birgitta König-Ries |
| Linking systems to improve data quality | |
| Javier Otegui, Robert Guralnick |
| SCAN - Southwest Collections of Arthropods Network: Leveraging Filtered Push Technology to Enhance Remote Taxonomic Identifications | |
| Nico Franz |
| Proposal of a metadata schema for biodiversity data quality | |
| Allan Koch Veiga, Antonio Mauro Saraiva, Anarosa Alves Franco Brandão, Etienne Americo Cartolano Jr. |
| Proposal of a methodology for dealing with Biodiversity Data Quality | |
| Allan Koch Veiga, Antonio Mauro Saraiva, Etienne Americo Cartolano Jr. |
| Collaborative validation of visual data through the Pl@ntNet identification system | |
| Samuel Dufour-Kowalski, Jeremy Salinier, Aurelien Peronnet, Jennifer Carré, Jean-Pascal Milcent, Hervé Goëau, Alexis Joly, Nozha Boujemaa, Pierre Bonnet, Julien Barbe, Jean-Francois Molino, Daniel Barthélémy |
| Biodiversity Data Quality - issues, methods and tools: Introduction | |
| Antonio Mauro Saraiva |
| Discussion | |
| Antonio Mauro Saraiva |
| Discussion | |
| Antonio Mauro Saraiva |
| Beyond Barriers: Exporting data quality assessments from Spain | |
| Arturo H. Ariño, Francisco Pando, Javier Otegui |
| Data quality assessment at CONABIO | |
| Raúl Jiménez |
Symposium: Crafting the future of a Global Biodiversity Heritage Library for diverse community’s needs
| A Current Overview of the Biodiversity Heritage Library | |
| Martin R. Kalfatovic |
| Finding a goldmine of natural history illustrations within BHL texts: the Art of Life project | |
| Trish Rose-Sandler |
| Biodiversity Heritage Library for Europe - past, present and future | |
| Jiri Frank |
| Discovering African biodiversity literature collections | |
| Lucy Waruingi |
| Expanding the Biodiversity Heritage Library | |
| William Ulate |
| Please phrase your question in the form of feedback... | |
| Constance Rinaldo |
| Questions & Discussion: Crafting the future of a Global Biodiversity Heritage Library for diverse community’s needs: the case of scientists. | |
| Martin Kalfatovic |
Workshop: Content provision workshop using BioCASe and OpenUp! infrastructure
| OpenUp! mobilised data overview / Benefits and possibilities for content providers | |
| Jiri Frank |
| ABCDEFG schema overview | |
| Falko Gloeckler |
| BioCASe Provider Software & BioCASe Monitor Service | |
| Falko Gloeckler |
| Sustaining a biodiversity data infrastructure: OpenUp!, BioCASE, and GBIF | |
| Walter G. Berendsohn |
| Data Quality Toolkit (DQT) | |
| Anton Güntsch |
| IPR in the biodiversity information and natural history domain | |
| Boris Jacob |
| Europeana API Services | |
| Boris Jacob |
| Global Genome Biodiversity Network (GGBN) Data Portal & ABCDDNA | |
| Gabriele Dröge |
| Natural History Meets Culture | |
| Heimo Rainer, Koller Wolfgang |
Workshop: Documenting the Darwin Core
| What is a Darwin Core Occurrence? (Part 1) | |
| John Wieczorek |
| What is a Darwin Core Occurrence? (Part 2) | |
| Richard L. Pyle |
| Clarifying the relationship between dwc:basisOfRecord, rdf:type, and the DwC Type Vocabulary | |
| Joel Sachs |
| Development of proposals and documentation; Future Directions | |
| James Alexander Macklin |
Symposium: Minimum Information Standards for Biological Collections: Beyond Darwin Core
| Stable identifiers and then quickly BEYOND | |
| Gregor Hagedorn |
| Using and Extending Darwin Core for structured attribute data | |
| Cynthia Parr, Patrick Leary, Jennifer Hammock, Katja Schulz, Nathan Wilson |
| Strategies and Vocabularies for Representing Interactions among Biodiversity Objects | |
| Greg Riccardi |
| World Flora Online | |
| Chuck Miller |
| Discussion - Beyond Darwin Core | |
| Greg Riccardi |
Symposium: Building and maintaining crowd sourcing Websites and their Communities
| Georeferencing Fishes: a Community-Based Model | |
| Nelson Rios, Henry Bart |
| Engaging Citizens in Specimen Digitization at the New York Botanical Garden Herbarium Specimens | |
| Barbara Mary Thiers |
| Recruiting the general public : results after 10 months of herbarium labels transcription | |
| Simon Chagnoux |
| Citizen Science, Opportunity Costs and Growing Pains: Notes from Nature Turns 4 Months Old | |
| Rob Penn Guralnick |
| Crowd sourcing climate change research | |
| Elizabeth Ellwood, Richard Primack, Peter Everill, Jane Marsching, Matthew Shanley |
| iDigBio's Public Participation in Digitization Management System | |
| Austin Mast, Elizabeth Ellwood, Robert Bruhn, Greg Riccardi |
| Crowd Sourcing and Community Management Capabilities Available within Symbiota Data Portals | |
| Nico Franz, Corinna Gries, Edward Gilbert |
| Panel Discussion: Building & Maintaining Crowd Sourcing Websites & their Communities | |
| Paul Kenneth Flemons |
Semantics for Biodiversity - Primer on Semantic Technologies
| Primer on Semantic Technologies | |
| Steve Baskauf, Mark Schildhauer |
Semantics for Biodiversity - Technologies, Reasoning and Annotation
| A faceted search system for facilitating the understanding and the prediction of ecosystem changes | |
| Marie-Angélique Laporte, Eric Garnier, Isabelle Mougenot |
| Building a Biodiversity Information Network using Persistent, Resolvable Identifiers | |
| John Deck, Robert Guralnick, John Kunze |
| Semantic matching of interests to annotations with SPARQL queries on reasoned triples | |
| Paul J Morris, James Hanken, Maureen Kelly, David Lowery, Bertram Ludäscher, James A. Macklin, Robert A Morris, Tianhong Song |
| Modeling Property Values: Is SKOS Part of the Solution or Part of the Problem? Knowledge Representation Issues. | |
| Robert A. Morris |
| The ingest and uses of specimen label data into semantic knowledge stores | |
| Bryan Heidorn, Steven Chong |
| SemantEco Annotator for Linked Data Generation and Generalized Semantic Mapping | |
| Patrice Seyed, Katherine Chastain, Brendan Ashby, Yue Liu, Timothy Lebo, Evan Patton, Deborah McGuinness |
| The BiSciCol Triplifier: bringing legacy biodiversity data to the Semantic Web | |
| Brian Stucky, Robert Guralnick, John Deck, Tom Conlin |
| An RDF Guide for the TDWG Darwin Core Standard | |
| Steven Baskauf, John Wieczorek, John Deck, Campbell Webb, Mark Schildhauer |
| Semantic approach for collection data via open data webs instead of closed systems | |
| Falko Glöckler, Alexander Kroupa, Anton Güntsch, Gregor Hagedorn |
Semantics for Biodiversity - Formal Models and Ontologies
| Implementing a semantic mediator to integrate flower-visiting records from South African natural history museums | |
| Willem Coetzer, Deshendran Moodley, Aurona Gerber |
| Using Answer Set Programming to Simulate the Interplay of Taxonomic and Nomenclatural Change | |
| Nico Franz, Joohyung Lee |
| A Toolkit for Reconciling Multiple Taxonomic Perspectives: Euler/X and the Perelleschus Use Case | |
| Nico Franz, Mingmin Chen, Shizhuo Yu, Shawn Bowers, Bertram Ludäscher |
| Using Darwin-SW to Answer Questions About Biodiversity Resources | |
| Steven Baskauf, Campbell Webb |
| Using Darwin Core as a Model: An Ontologically Minimalist Approach to Publishing Occurrence Data in RDF | |
| Joel Sachs |
| A New Metadata Checklist For Describing Species Inventory Completeness | |
| Rob Guralnick, Ramona Walls, Walter Jetz |
| Text Mining for Biodiversity Ontologies | |
| Mark Schildhauer, Benjamin Adams |
| Linking Biodiversity Data with the Biological Collections Ontology | |
| Ramona Walls, John Deck, Robert Guralnick, John Wieczorek |
| Ontology Extraction from Unstructured Text in the Biodiversity Domain | |
| Daniele Cristina Palazzi Krempser, Ana Maria Moura, Maria Luiza Machado Campos, Luiz Gadelha |
Semantics for Biodiversity - Interoperability with Genomic and Environmental semantics
| The Crop Ontology: towards the semantic integration of open plant trait data | |
| Elizabeth Arnaud, Luca Matteis, Pierre-Yves Chibon, Milko Skofic, Pankaj Jaiswal, Laurel Cooper, Rosemary Shrestha, Mark Wilkinson, Richard Bruskiewich, Graham McLaren |
| User-Based Sub-Ontology Extraction – A Means to Support Semantic Annotation of Biodiversity Data | |
| Dennis Heimann, Birgitta König-Ries |
| Identification of Environment Ontology terms in Text and Annotation of Biodiversity (ENVIRONMENTS-EOL) and Genomics (SEQenv) Information | |
| Evangelos Pafilis, Sune Frankild, Umer Ijaz, Lucia Fanini, Sarah Faulwetter, Christina Pavloudi, Julia Schnetzer, Aikaterini Vasileiadou, Christos Arvanitidis, Christopher Quince, Lars Juhl Jensen |
| Hierarchical Search in SemantEco Supporting Varied Ontology Design Patterns | |
| Patrice Seyed, Evan Patton, Deborah McGuinness |
| Semantic tools for aggregation of morphological characters across studies | |
| James Balhoff, Alex Dececchi, Paula Mabee, Hilmar Lapp |
| Prototyping a botanical knowledge portal | |
| James Macklin, Joel Sachs, Hong Cui, Heather Cole |
| Collaboratively Creating Computable Species Descriptions | |
| Nathan Wilson |
| Linking Data For Real: How and Why The Current Situation Stinks Big Time | |
| Rob Guralnick, Tom Conlin, Nico Cellinese, John Deck |
| The Earth Microbiome Project: Planetary-scale systems ecology. | |
| Sean Gibbons, Jack Gilbert, Rob Knight, Janet Jansson, Jai Rideout, Antonio Gonzales, Emmanuel Prestat, J Gregory Caporaso |
| Practical interoperability across semantic stores of data for ecological, taxonomic, phylogenetic, and metagenomics research | |
| Cynthia Parr |
Workshop: Biodiversity for Cooperation and Development
| Workshop: Biodiversity for Cooperation and Development | |
| Patricia Mergen |
Symposium: Mobilizing biodiversity information in Sub-Saharan Africa
| OPENING UP THE AFRICAN SAVANNAH BIODIVERSITY INFORMATION | Untitled () reviewed Abstract _Patricia Merg |
| Kudzai Mafuwe |
| Coping with the technical and institutional changing context in cooperation development projects. | reviewed Abstract _Patricia Merg |
| Franck Theeten |
| The Use of Plants Database to Identify Gaps in Biodiversity Conservation Network in Madagascar. | reviewed Abstract _Patricia Merg |
| Tantely Raminosoa |
| A Biodiversity Network Data Centre for Africa | reviewed Abstract _Patricia Merg |
| Wim Hugo |
| A bioinformatics journey towards biodiversity information availability and use in Rwanda | |
| Prosper Karame |
| Opening Remarks | |
| Patricia Mergen, Henry L. Bart |
Workshop Darwin Core Archives: beyond star schema
| Darwin Core Archives and the Encyclopedia of Life | |
| Patrick Leary |
| Darwin Core Archive and the Global Genome Biodiversity Network | |
| Gabriele Droege, Katharine Barker, Paul Flemons |
| An iDigBio perspective on Darwin Core Archives | |
| Alexander Thompson, Jose Fortes, Andrea Matsunaga |
| Discussion - Darwin Core Archives: beyond star schema | |
| Gabriele Droege, Patrick Leary |
Symposium: Developing a Names-based Architecture for Linking Biodiversity Data
| Towards a Global Names Architecture: A Names-Based Backbone for Integrating Global Biodiversity Data | |
| Richard L. Pyle |
| A names backbone – a graph of taxonomy | |
| Nicky Nicolson |
| Dynamics of taxon concepts: How to handle changes of taxonomic information, and why? | |
| Oskar Kindvall |
| Concepts and Tools Needed to Increase Bottom-Up Taxonomic Expert Participation in a Global Names-Based Infrastructure | |
| Nico Franz, David Patterson, Sudhir Kumar, Edward Gilbert |
| Design of "LODAC Species" as a Names-based Linked Open Data architecture | |
| Akihiro Kameda, Fumihiro Kato, Utsugi Jimbo, Ikki Ohmukai, Hideaki Takeda |
| What Taxonomic information is 'Open Access'? | |
| Donat Agosti, Gregor Hagedorn, Willi Egloff, David Patterson |
| BiOnym – a flexible workflow approach to taxon name matching | |
| Edward Vanden Berghe, Nicolas Bailly, Caselyn Aldemita, Fabio Fiorellato, Gianpaolo Coro, Anton Ellenbroek, Pasquale Pagano |
| The EDIT Platform for Cybertaxonomy as an information broker in name infrastructures | |
| Andreas Kohlbecker, Yde de Jong, Cherian Mathew, Lorna Morris, Andreas Müller, Anton Güntsch, Walter Berendsohn |
| Scratchpads: The virtual research environment for biodiversity data | |
| Simon Rycroft, Dave Roberts, Vince Smith, Alice Heaton, Katherine Bouton, Laurence Livermore, Dimitris Koureas, Ed Baker |
| Development of a dataportal providing European taxonomic information: past activities and future plans | |
| Simon Claus, Yde de Jong, Klaas Deneudt, Bart Vanhoorne, Francisco Hernandez |
| A pan-European Species-directories Infrastructure (PESI) | |
| Yde de Jong, Florian Wetzel, Gregor Hagendorn, Falko Gloeckler, Christoph Haeuser, Marc Geoffroy, Eckhard von Raab-Straube, Anton Guentsch, Walter Berendsohn, Nicola Nicolson, Alan Paton, Paul Kirk, Bart Vanhoorne, Simon Claus, Francisco (Tjess) Hernandez, Jan Mees, Christos Arvanitidis, Hannu Saarenmaa, Valerio Sbordoni, Aaike De Wever, Hendrik Segers, Ulf Gärdenfors, David King |
| In the hot seat: managing data- and workflows between biologists and computers | |
| Dmitry Schigel, Hanna Koivula, Esko Piirainen, Eija-Leena Laiho |
| Taxonomic Names-related Poster Introductions | |
| Richard L. Pyle |
Workshop: Sharing and delivery of reusable phylogenetic knowledge
| SUPERSMART: Self-Updating Platform for Estimating Rates of Speciation and Migration, Ages and Relationships of Taxa | |
| Alexandre Antonelli |
| Numerical tree representations and their application to MCMC phylogenetic inference, phylogenetic signal, and ... database query | |
| Saverio Vicario |
| Quest for Orthologs: anchoring comparative biology research | |
| Suzanna Lewis, Quest for Orthologs Consortium |
| Assembling a draft overall tree of life from phylogenetic trees and taxonomic databases | |
| Jonathan A Rees |
| Sharing phylogenetic data: even more vital for morphological data | |
| Ross Mounce |
| PhyloTastic - names-based phyloinformatic data integration | |
| Rutger Vos |
| Panel Discussion: Sharing & Delivery of Reusable Phylogenetic Knowledge | |
| Hilmar Lapp |
| Workshop: Sharing & Delivery of Reusable Phylogenetic Knowledge | |
| Rutger Vos, Nico Cellinese, Hilmar Lapp |
Symposium: Biodiversity vocabulary management - outcomes of the VoMaG Task Group
| Developing a vocabulary: the SINP use case | |
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| Semantic MediaWiki - a community platform for vocabulary development | |
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| Introduction to VoMaG | |
| Éamonn Ó Tuama |
| The TDWG Ontologies | |
| Steve Baskauf |
| A framework for managing vocabularies | |
| Dag Endresen |
| Modeling Property Values: is SKOS part of the solution or part of the problem? | |
| Robert A Morris |
| General Discussion - Outcomes of the TDWG Vocabulary Management Task Group | |
| Éamonn Ó Tuama |
Hackathon: Use of Semantic MediaWiki for vocabulary management
| Use of Semantic MediaWiki for vocabulary management (Hackathon) | |
| Gregor Hagedorn, Dag Endresen, Éamonn Ó Tuama |
Workshop: Darwin Core DNA and Tissue Data Standard for the Global Genome Biodiversity Network
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| Paul Kenneth Flemons, Katharine Barker, Gabrielle Dröge |
Symposium: Scholarly Data Publishing in Biodiversity: Challenges and Potentials
| NPG-GBIF Roadmap for Biodiversity Data Publishing through Scientific Data | |
| Susanna Sansone, Vishwas Chavan |
| Incentivising Biodiversity Data Publishing: GBIF-Pensoft Partnership | |
| Vishwas Chavan, Lyubomir Penev, Teodor Georgiev |
| Next generation sequencing requires next generation publishing: The Biodiversity Data Journal published the first Eukaryotic new species with a fully sequenced transcriptome, DNA barcode and microcomputed tomography | |
| Lyubomir Penev, Pavel Stoev, Ana Komericki, Nesrine Akkari, Shalini Li, Xin Zhou, Scott Edmunds, Chris Hunter, Alexander Weigand, David Porco, Marzio Zapparoli, Teodor Georgiev, Daniel Mietchen, Dave Roberts, Vincent Smith |
| Exploring the future of scholarly publishing of biodiversity data | |
| Vishwas Chavan |
| Panel Discussion - Scholarly Data Publishing | |
| Lyubomir Penev, Susanna Sansone, Vishwas Chavan |
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