Presentations and Authors


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General Papers

Online Annotation of Biodiversity Data – the AnnoSys Approach
Okka Tschoepe, Lutz Suhrbier, Anton Güntsch, Walter G. Berendsohn
Hands-On AnnoSys – Managing Annotations Online
Lutz Suhrbier, Okka Tschöpe
eMonocot - A successful virtual community
Annapaola Santarsiero, Benjamin Clark, Joseph Kelly, Charles Godfray
Using ElasticSearch as a fast, flexible, and scalable solution to search occurrence records and checklists
Christian Gendreau, Marie-Elise Lecoq, David P. Shorthouse, Luc Brouillet
FOBioS: a functional ontology for biodiversity standards interoperability
Silvia Scheunemann, Fabiana Soares Santana, Anarosa Alves Franco Brandao
Assisted restructure of web content for paper-based presentation: a look at work flows and data representations
Alice Heaton, Simon Rycroft, Ed Baker, Katherine Bouton, Ben Scott, Koureas Dimitris, Laurence Livermore, Dave Roberts, Vince Smith
The Natural History Museum Data Portal
Ben Scott
Bibliography of Life (RefBank and ReFinder): A tool to discover, download, correct, and format bibliographic references
Guido Sautter, Jordan Biserkov
iDigBio Data Integration with Self-Referential Schemas
Sarfaraz Ahmed Soomro, Andrea Matsunaga, José A. B. Fortes
Coupling phenotype descriptions and phylogenetic trees: from SDD to ontologies via graph databases
Anaïs Grand, Régine Vignes Lebbe, Eduardo Miranda, André Santanchè
Crowd sourcing in an attention economy
Olivier Rovellotti, Julie Chabalier, Amandine Sahl
Linnaeus Next Generation for species information and identification
Wouter Addink, Maarten Schermer, Ruud Altenburg, Huub Veldhuijzen, Edwin van Spronsen, Peter Schalk
Lost in annotation? A publish-subscribe extension for Semantic MediaWiki vocabulary management system
Julie Chabalier, Amandine Sahl, Olivier Rovellotti
ViBRANT: progress towards an integrated framework
Vince Smith, Dave Roberts
From archives to apps, the story of VertNet
Aaron Steele, John Wieczorek

Posters

Bibliography of Life: Comprehensive services for biodiversity bibliographic references
David King, Guido Sautter, David Morse, Lyubomir Penev, Jordan Biserkov, Teodor Georgiev, Dave Roberts, Vince Smith
Practical Use and Database Quality Control of the Korea National Biospecies Information System
Sangyong KIM, Jae-Hyeun KIM, You-Mi LEE, Joon-Hwan SHIN
Enhancing Data Quality using AnnoSys – An Annotation System for Biodiversity Data
Lutz Suhrbier, Okka Tschöpe
#biobr – Citizen Science from social network
Etienne Americo Cartolano, Antonio Mauro Saraiva, Allan Koch Veiga
The Catalogue of Life Virtual Community
Peter Schalk, Wouter Addink, Yuri Roskov
FADA: Freshwater Animal Diversity Assessment
Aaike De Wever, Hendrik Segers, Koen Martens
Plinian Core: integrating information about species
Santiago Martínez de la Riva, Carmen Quesada, Francisco Pando de la Hoz, Bárbara Ayala-Orozco, Ángela M. Suárez-Mayorga, María Mora, Danny Vélez, Jose Trinidad Mendoza Gaytan, Daniel Lins da Silva, Patricia Koleff, Maria Esther Quintero Rivero, Aurelio Sanabria
Building a mass-digitisation service infrastructure and user communities
Hannu Saarenmaa, Tero Mononen, Janne Karppinen, Mira Sääskilahti, Riitta Tegelberg
BioFresh: building a collaborative global freshwater biodiversity data hub
Aaike De Wever, Astrid Schmidt-Kloiber, Nicolas Bailly, Vanessa Bremerich, Paul Jepson, Jörg Freyhof, Koen Martens, Klement Tockner
M-EOL: biodiversity awareness for gamers
Julie Chabalier, Céline Vidal, Amandine Sahl, Olivier Rovellotti

Symposium: Empowering International e-Collaboration for Sustainability

Use it or lose it: Crowdsourcing support and outreach activities in a hybrid sustainability model for e-infrastructures – The ViBRANT project case studies
Dimitrios Koureas, Laurence Livermore, Dave Roberts, Vincent Smith
Potential Refinement of the BARCODE Data Standard for Forensic Application: The Barcode of Wildlife Project
David E. Schindel
We can foster collaboration and improve the results of biodiversity informatics
Antonio Mauro Saraiva

Symposium Biodiversity informatics services and workflows

Provenance in Scientific Workflows: Challenges and Opportunities for Biodiversity Informatics
Bertram Ludaescher, Paolo Missier, David Lowery, Tianhong Song, Maureen Kelly, Sven Koehler, James Macklin, Paul Morris, Robert Morris, James Hanken
Improving Natural Science Collections Data through Quality Control for Research using Workflows Embedded in a FilteredPush network
James A Macklin, James Hanken, Maureen Kelly, Sven Koehler, David B Lowery, Bertram Ludaescher, Paul J Morris, Robert A Morris, Tianhong Song

Symposium: Big Data coming from Earth Observation Networks

The GEOSS Brokering System
Paolo Mazzetti, Stefano Nativi, Mattia Santoro, Fabrizio Papeschi
Integrating observation and survey data for production of essential biodiversity variables – the EU BON approach
Hannu Saarenmaa

Symposium: Biodiversity Data Quality – issues, methods and tools

Data quality challenges in the Canadensys network of occurrence records: examples, tools, and solutions
Christian Gendreau, David P. Shorthouse, Peter Desmet
Proposal of a metadata schema for biodiversity data quality
Allan Koch Veiga, Antonio Mauro Saraiva, Anarosa Alves Franco Brandão, Etienne Americo Cartolano Jr.
Proposal of a methodology for dealing with Biodiversity Data Quality
Allan Koch Veiga, Antonio Mauro Saraiva, Etienne Americo Cartolano Jr.
Collaborative validation of visual data through the Pl@ntNet identification system
Samuel Dufour-Kowalski, Jeremy Salinier, Aurelien Peronnet, Jennifer Carré, Jean-Pascal Milcent, Hervé Goëau, Alexis Joly, Nozha Boujemaa, Pierre Bonnet, Julien Barbe, Jean-Francois Molino, Daniel Barthélémy
Biodiversity Data Quality - issues, methods and tools: Introduction
Antonio Mauro Saraiva
Discussion
Antonio Mauro Saraiva
Discussion
Antonio Mauro Saraiva

Workshop: Documenting the Darwin Core

Clarifying the relationship between dwc:basisOfRecord, rdf:type, and the DwC Type Vocabulary
Joel Sachs

Symposium: Minimum Information Standards for Biological Collections: Beyond Darwin Core

Using and Extending Darwin Core for structured attribute data
Cynthia Parr, Patrick Leary, Jennifer Hammock, Katja Schulz, Nathan Wilson

Symposium: Building and maintaining crowd sourcing Websites and their Communities

Crowd sourcing climate change research
Elizabeth Ellwood, Richard Primack, Peter Everill, Jane Marsching, Matthew Shanley

Semantics for Biodiversity - Primer on Semantic Technologies

Primer on Semantic Technologies
Steve Baskauf, Mark Schildhauer

Semantics for Biodiversity - Technologies, Reasoning and Annotation

Semantic matching of interests to annotations with SPARQL queries on reasoned triples
Paul J Morris, James Hanken, Maureen Kelly, David Lowery, Bertram Ludäscher, James A. Macklin, Robert A Morris, Tianhong Song
SemantEco Annotator for Linked Data Generation and Generalized Semantic Mapping
Patrice Seyed, Katherine Chastain, Brendan Ashby, Yue Liu, Timothy Lebo, Evan Patton, Deborah McGuinness
The BiSciCol Triplifier: bringing legacy biodiversity data to the Semantic Web
Brian Stucky, Robert Guralnick, John Deck, Tom Conlin
An RDF Guide for the TDWG Darwin Core Standard
Steven Baskauf, John Wieczorek, John Deck, Campbell Webb, Mark Schildhauer

Semantics for Biodiversity - Formal Models and Ontologies

Using Darwin Core as a Model: An Ontologically Minimalist Approach to Publishing Occurrence Data in RDF
Joel Sachs
Text Mining for Biodiversity Ontologies
Mark Schildhauer, Benjamin Adams

Semantics for Biodiversity - Interoperability with Genomic and Environmental semantics

The Crop Ontology: towards the semantic integration of open plant trait data
Elizabeth Arnaud, Luca Matteis, Pierre-Yves Chibon, Milko Skofic, Pankaj Jaiswal, Laurel Cooper, Rosemary Shrestha, Mark Wilkinson, Richard Bruskiewich, Graham McLaren
Identification of Environment Ontology terms in Text and Annotation of Biodiversity (ENVIRONMENTS-EOL) and Genomics (SEQenv) Information
Evangelos Pafilis, Sune Frankild, Umer Ijaz, Lucia Fanini, Sarah Faulwetter, Christina Pavloudi, Julia Schnetzer, Aikaterini Vasileiadou, Christos Arvanitidis, Christopher Quince, Lars Juhl Jensen
Hierarchical Search in SemantEco Supporting Varied Ontology Design Patterns
Patrice Seyed, Evan Patton, Deborah McGuinness
Prototyping a botanical knowledge portal
James Macklin, Joel Sachs, Hong Cui, Heather Cole

Symposium: Developing a Names-based Architecture for Linking Biodiversity Data

Scratchpads: The virtual research environment for biodiversity data
Simon Rycroft, Dave Roberts, Vince Smith, Alice Heaton, Katherine Bouton, Laurence Livermore, Dimitris Koureas, Ed Baker
A pan-European Species-directories Infrastructure (PESI)
Yde de Jong, Florian Wetzel, Gregor Hagendorn, Falko Gloeckler, Christoph Haeuser, Marc Geoffroy, Eckhard von Raab-Straube, Anton Guentsch, Walter Berendsohn, Nicola Nicolson, Alan Paton, Paul Kirk, Bart Vanhoorne, Simon Claus, Francisco (Tjess) Hernandez, Jan Mees, Christos Arvanitidis, Hannu Saarenmaa, Valerio Sbordoni, Aaike De Wever, Hendrik Segers, Ulf Gärdenfors, David King
In the hot seat: managing data- and workflows between biologists and computers
Dmitry Schigel, Hanna Koivula, Esko Piirainen, Eija-Leena Laiho

Symposium: Scholarly Data Publishing in Biodiversity: Challenges and Potentials

NPG-GBIF Roadmap for Biodiversity Data Publishing through Scientific Data
Susanna Sansone, Vishwas Chavan
Next generation sequencing requires next generation publishing: The Biodiversity Data Journal published the first Eukaryotic new species with a fully sequenced transcriptome, DNA barcode and microcomputed tomography
Lyubomir Penev, Pavel Stoev, Ana Komericki, Nesrine Akkari, Shalini Li, Xin Zhou, Scott Edmunds, Chris Hunter, Alexander Weigand, David Porco, Marzio Zapparoli, Teodor Georgiev, Daniel Mietchen, Dave Roberts, Vincent Smith
Panel Discussion - Scholarly Data Publishing
Lyubomir Penev, Susanna Sansone, Vishwas Chavan


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