General Papers
Online Annotation of Biodiversity Data – the AnnoSys Approach | |
Okka Tschoepe, Lutz Suhrbier, Anton Güntsch, Walter G. Berendsohn |
Hands-On AnnoSys – Managing Annotations Online | |
Lutz Suhrbier, Okka Tschöpe |
eMonocot - A successful virtual community | |
Annapaola Santarsiero, Benjamin Clark, Joseph Kelly, Charles Godfray |
Using ElasticSearch as a fast, flexible, and scalable solution to search occurrence records and checklists | |
Christian Gendreau, Marie-Elise Lecoq, David P. Shorthouse, Luc Brouillet |
FOBioS: a functional ontology for biodiversity standards interoperability | |
Silvia Scheunemann, Fabiana Soares Santana, Anarosa Alves Franco Brandao |
Assisted restructure of web content for paper-based presentation: a look at work flows and data representations | |
Alice Heaton, Simon Rycroft, Ed Baker, Katherine Bouton, Ben Scott, Koureas Dimitris, Laurence Livermore, Dave Roberts, Vince Smith |
The Natural History Museum Data Portal | |
Ben Scott |
Bibliography of Life (RefBank and ReFinder): A tool to discover, download, correct, and format bibliographic references | |
Guido Sautter, Jordan Biserkov |
iDigBio Data Integration with Self-Referential Schemas | |
Sarfaraz Ahmed Soomro, Andrea Matsunaga, José A. B. Fortes |
Coupling phenotype descriptions and phylogenetic trees: from SDD to ontologies via graph databases | |
Anaïs Grand, Régine Vignes Lebbe, Eduardo Miranda, André Santanchè |
Crowd sourcing in an attention economy | |
Olivier Rovellotti, Julie Chabalier, Amandine Sahl |
Linnaeus Next Generation for species information and identification | |
Wouter Addink, Maarten Schermer, Ruud Altenburg, Huub Veldhuijzen, Edwin van Spronsen, Peter Schalk |
Lost in annotation? A publish-subscribe extension for Semantic MediaWiki vocabulary management system | |
Julie Chabalier, Amandine Sahl, Olivier Rovellotti |
ViBRANT: progress towards an integrated framework | |
Vince Smith, Dave Roberts |
From archives to apps, the story of VertNet | |
Aaron Steele, John Wieczorek |
Posters
Bibliography of Life: Comprehensive services for biodiversity bibliographic references | |
David King, Guido Sautter, David Morse, Lyubomir Penev, Jordan Biserkov, Teodor Georgiev, Dave Roberts, Vince Smith |
Practical Use and Database Quality Control of the Korea National Biospecies Information System | |
Sangyong KIM, Jae-Hyeun KIM, You-Mi LEE, Joon-Hwan SHIN |
Enhancing Data Quality using AnnoSys – An Annotation System for Biodiversity Data | |
Lutz Suhrbier, Okka Tschöpe |
#biobr – Citizen Science from social network | |
Etienne Americo Cartolano, Antonio Mauro Saraiva, Allan Koch Veiga |
The Catalogue of Life Virtual Community | |
Peter Schalk, Wouter Addink, Yuri Roskov |
FADA: Freshwater Animal Diversity Assessment | |
Aaike De Wever, Hendrik Segers, Koen Martens |
Plinian Core: integrating information about species | |
Santiago Martínez de la Riva, Carmen Quesada, Francisco Pando de la Hoz, Bárbara Ayala-Orozco, Ángela M. Suárez-Mayorga, María Mora, Danny Vélez, Jose Trinidad Mendoza Gaytan, Daniel Lins da Silva, Patricia Koleff, Maria Esther Quintero Rivero, Aurelio Sanabria |
Building a mass-digitisation service infrastructure and user communities | |
Hannu Saarenmaa, Tero Mononen, Janne Karppinen, Mira Sääskilahti, Riitta Tegelberg |
BioFresh: building a collaborative global freshwater biodiversity data hub | |
Aaike De Wever, Astrid Schmidt-Kloiber, Nicolas Bailly, Vanessa Bremerich, Paul Jepson, Jörg Freyhof, Koen Martens, Klement Tockner |
M-EOL: biodiversity awareness for gamers | |
Julie Chabalier, Céline Vidal, Amandine Sahl, Olivier Rovellotti |
Symposium: Empowering International e-Collaboration for Sustainability
Use it or lose it: Crowdsourcing support and outreach activities in a hybrid sustainability model for e-infrastructures – The ViBRANT project case studies | |
Dimitrios Koureas, Laurence Livermore, Dave Roberts, Vincent Smith |
Potential Refinement of the BARCODE Data Standard for Forensic Application: The Barcode of Wildlife Project | |
David E. Schindel |
We can foster collaboration and improve the results of biodiversity informatics | |
Antonio Mauro Saraiva |
Symposium Biodiversity informatics services and workflows
Provenance in Scientific Workflows: Challenges and Opportunities for Biodiversity Informatics | |
Bertram Ludaescher, Paolo Missier, David Lowery, Tianhong Song, Maureen Kelly, Sven Koehler, James Macklin, Paul Morris, Robert Morris, James Hanken |
Improving Natural Science Collections Data through Quality Control for Research using Workflows Embedded in a FilteredPush network | |
James A Macklin, James Hanken, Maureen Kelly, Sven Koehler, David B Lowery, Bertram Ludaescher, Paul J Morris, Robert A Morris, Tianhong Song |
Symposium: Big Data coming from Earth Observation Networks
The GEOSS Brokering System | |
Paolo Mazzetti, Stefano Nativi, Mattia Santoro, Fabrizio Papeschi |
Integrating observation and survey data for production of essential biodiversity variables – the EU BON approach | |
Hannu Saarenmaa |
Symposium: Biodiversity Data Quality – issues, methods and tools
Data quality challenges in the Canadensys network of occurrence records: examples, tools, and solutions | |
Christian Gendreau, David P. Shorthouse, Peter Desmet |
Proposal of a metadata schema for biodiversity data quality | |
Allan Koch Veiga, Antonio Mauro Saraiva, Anarosa Alves Franco Brandão, Etienne Americo Cartolano Jr. |
Proposal of a methodology for dealing with Biodiversity Data Quality | |
Allan Koch Veiga, Antonio Mauro Saraiva, Etienne Americo Cartolano Jr. |
Collaborative validation of visual data through the Pl@ntNet identification system | |
Samuel Dufour-Kowalski, Jeremy Salinier, Aurelien Peronnet, Jennifer Carré, Jean-Pascal Milcent, Hervé Goëau, Alexis Joly, Nozha Boujemaa, Pierre Bonnet, Julien Barbe, Jean-Francois Molino, Daniel Barthélémy |
Biodiversity Data Quality - issues, methods and tools: Introduction | |
Antonio Mauro Saraiva |
Discussion | |
Antonio Mauro Saraiva |
Discussion | |
Antonio Mauro Saraiva |
Workshop: Documenting the Darwin Core
Clarifying the relationship between dwc:basisOfRecord, rdf:type, and the DwC Type Vocabulary | |
Joel Sachs |
Symposium: Minimum Information Standards for Biological Collections: Beyond Darwin Core
Using and Extending Darwin Core for structured attribute data | |
Cynthia Parr, Patrick Leary, Jennifer Hammock, Katja Schulz, Nathan Wilson |
Symposium: Building and maintaining crowd sourcing Websites and their Communities
Crowd sourcing climate change research | |
Elizabeth Ellwood, Richard Primack, Peter Everill, Jane Marsching, Matthew Shanley |
Semantics for Biodiversity - Primer on Semantic Technologies
Primer on Semantic Technologies | |
Steve Baskauf, Mark Schildhauer |
Semantics for Biodiversity - Technologies, Reasoning and Annotation
Semantic matching of interests to annotations with SPARQL queries on reasoned triples | |
Paul J Morris, James Hanken, Maureen Kelly, David Lowery, Bertram Ludäscher, James A. Macklin, Robert A Morris, Tianhong Song |
SemantEco Annotator for Linked Data Generation and Generalized Semantic Mapping | |
Patrice Seyed, Katherine Chastain, Brendan Ashby, Yue Liu, Timothy Lebo, Evan Patton, Deborah McGuinness |
The BiSciCol Triplifier: bringing legacy biodiversity data to the Semantic Web | |
Brian Stucky, Robert Guralnick, John Deck, Tom Conlin |
An RDF Guide for the TDWG Darwin Core Standard | |
Steven Baskauf, John Wieczorek, John Deck, Campbell Webb, Mark Schildhauer |
Semantics for Biodiversity - Formal Models and Ontologies
Using Darwin Core as a Model: An Ontologically Minimalist Approach to Publishing Occurrence Data in RDF | |
Joel Sachs |
Text Mining for Biodiversity Ontologies | |
Mark Schildhauer, Benjamin Adams |
Semantics for Biodiversity - Interoperability with Genomic and Environmental semantics
The Crop Ontology: towards the semantic integration of open plant trait data | |
Elizabeth Arnaud, Luca Matteis, Pierre-Yves Chibon, Milko Skofic, Pankaj Jaiswal, Laurel Cooper, Rosemary Shrestha, Mark Wilkinson, Richard Bruskiewich, Graham McLaren |
Identification of Environment Ontology terms in Text and Annotation of Biodiversity (ENVIRONMENTS-EOL) and Genomics (SEQenv) Information | |
Evangelos Pafilis, Sune Frankild, Umer Ijaz, Lucia Fanini, Sarah Faulwetter, Christina Pavloudi, Julia Schnetzer, Aikaterini Vasileiadou, Christos Arvanitidis, Christopher Quince, Lars Juhl Jensen |
Hierarchical Search in SemantEco Supporting Varied Ontology Design Patterns | |
Patrice Seyed, Evan Patton, Deborah McGuinness |
Prototyping a botanical knowledge portal | |
James Macklin, Joel Sachs, Hong Cui, Heather Cole |
Symposium: Developing a Names-based Architecture for Linking Biodiversity Data
Scratchpads: The virtual research environment for biodiversity data | |
Simon Rycroft, Dave Roberts, Vince Smith, Alice Heaton, Katherine Bouton, Laurence Livermore, Dimitris Koureas, Ed Baker |
A pan-European Species-directories Infrastructure (PESI) | |
Yde de Jong, Florian Wetzel, Gregor Hagendorn, Falko Gloeckler, Christoph Haeuser, Marc Geoffroy, Eckhard von Raab-Straube, Anton Guentsch, Walter Berendsohn, Nicola Nicolson, Alan Paton, Paul Kirk, Bart Vanhoorne, Simon Claus, Francisco (Tjess) Hernandez, Jan Mees, Christos Arvanitidis, Hannu Saarenmaa, Valerio Sbordoni, Aaike De Wever, Hendrik Segers, Ulf Gärdenfors, David King |
In the hot seat: managing data- and workflows between biologists and computers | |
Dmitry Schigel, Hanna Koivula, Esko Piirainen, Eija-Leena Laiho |
Symposium: Scholarly Data Publishing in Biodiversity: Challenges and Potentials
NPG-GBIF Roadmap for Biodiversity Data Publishing through Scientific Data | |
Susanna Sansone, Vishwas Chavan |
Next generation sequencing requires next generation publishing: The Biodiversity Data Journal published the first Eukaryotic new species with a fully sequenced transcriptome, DNA barcode and microcomputed tomography | |
Lyubomir Penev, Pavel Stoev, Ana Komericki, Nesrine Akkari, Shalini Li, Xin Zhou, Scott Edmunds, Chris Hunter, Alexander Weigand, David Porco, Marzio Zapparoli, Teodor Georgiev, Daniel Mietchen, Dave Roberts, Vincent Smith |
Panel Discussion - Scholarly Data Publishing | |
Lyubomir Penev, Susanna Sansone, Vishwas Chavan |

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