Presentations and Authors

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General Papers

Need for Controlled Vocabularies on Intellectual Property Right statements ?
Patricia Mergen, Larissa Smirnova, Jiri Frank


Digital Object Identifiers (DOIs) for the Biodiversity Heritage Library
Martin Kalfatovic, Carolyn Sheffield, William Ulate, Connie Rinaldo, Grace Costantino
Linnaeus Next Generation for species information and identification
Wouter Addink, Maarten Schermer, Huub Veldhuijzen, Peter Schalk, Maarten van der Velde
Helpdesk and training facilities at the Royal Museum for Central Africa, now EU BON oriented.
Larissa Smirnova, Kim Jacobsen, Patricia Mergen, Franck Theeten, Hannu Saarenmaa
DigiWeb – quality driven workflow environment for digitisation of natural history specimens
Tero Mononen, Riitta Tegelberg, Mira Sääskilahti, Markku A. Huttunen, Marko Tähtinen, Hannu Saarenmaa
The DINA consortium
Markus Skyttner, Kevin Holston, Ida Li, Ingimar Erlingsson, Stefan Daume, Karin Karlsson, Fredrik Ronquist
Predicting local species lists: an example and a challenge
Robert D. Stevenson, Rafer Dannenhauer
Crowdsourcing portal for transcription of label information for Norwegian natural history collections
Dag Endresen, Christian Svindseth, Einar Timdal, Eirik Rindal
The Crop Ontology: Integrating the Participatory Variety Selection (PVS)
Léo Valette, Shiv Kumar Agrawal, Ramaiah Bhavanasi, Antonio Lopez-Montez, Sidibe Mamourou, Praveen Reddy Teegala, Trushar Shah, Gilles Trouche, Kirsten vom Brocke, Jean-François Rami, Eva Weltzien, Karthika Rajendran, Harold Durufle, Marie-Angélique Laporte, Luca Matteis, Elizabeth Arnaud
Centralising thematic (freshwater) biodiversity data using the Darwin Core standard and GBIF’s Integrated Publishing Toolkit (IPT)
Aaike De Wever, Astrid Schmidt-Kloiber, Sylvain Renaudier, Michel Kapel, Robert Vogl, Koen Martens
Project Bio-API
Jeroen Snijders, Wouter Addink, Daphne Duin, Ayco Holleman, Wilfred Gerritsen, Ruud Alternburg, Maarten van der Velde
Biodiversity and sustainable conservation of the fish fauna and fisheries of the Congolese waters of Lake Albert
Jargy Kambale Soheranda
Collecting ideas: We are making an e-book
Soili Stenroos, Vanamo Salo, Hanna Koivula, Dmitry Schigel

Interest Group

(Proposed) Interest Group on Data Quality
Antonio Mauro Saraiva, Arthur D. Chapman, Allan Koch Veiga

S01. Symposium: Biodiversity Informatics workflows and services

Analytical Workflows for Large Data
Christian Authmann, Christian Beilschmidt, Johannes Drönner, Michael Mattig, Bernhard Seeger
Workflow Support for Continuous Data Quality Control in a FilteredPush Network
Bertram Ludaescher, James Hanken, David Lowery, James Macklin, Paul J Morris, Robert Morris, Tianhong Song
Scalable and Provenance-Enabled Scientific Workflows for Species Distribution Modeling
Luiz Gadelha, Guilherme Gall, Andrea Sanchez-Tapia, Marinez Ferreira de Siqueira, Jorge Velásquez, Daniel Lopez
Biodiversity Data Quality tailored for Scientific Workflows
Christian Gendreau, Allan Koch Veiga, David P. Shorthouse, Antonio Mauro Saraiva

S02. Symposium: Biodiversity Data Quality - issues, methods and tools

Data Quality Symposium: introduction and review of activities
Antonio Mauro Saraiva
Toward a Conceptual Framework for the Assessment and Management of the Fitness-for-Use of Biodiversity Data
Allan Koch Veiga, Antonio Mauro Saraiva
Darwin Core Archive (DwC-A) validation: A New Collaborative Effort
Christian Gendreau, David P. Shorthouse, Tim Robertson, Marie-Élise Lecoq
Two approaches to finding botanical duplicate occurrences (and other relations among specimens) in the face of noisy data
Robert A Morris, James Hanken, David B. Lowery, Bertram Ludäscher, James A. Macklin, Chuck McCallum, Paul J. Morris, Tianhong Song
Antonio Mauro Saraiva

S03. Standards for mobilising and integrating sample-based data

Hannu Saarenmaa

S04. Names-based Architecture for Linking Biodiversity Data

Identifying funding and collaboration opportunities to support the global names e-infrastructure
Dimitris Koureas, Vince Smith

S05. Access to digitisation tools and methods

The Open Drawer Project - Providing free access to high resolution images of entomological collection drawers
Alexander Kroupa, Falko Glöckler, Bernhard Schurian, Felix Maier, Stefan Schmidt, Gregor Hagedorn, Christoph Häuser
StanDAP-Herb develops a standard process for extracting metadata from digitised herbarium specimens
Agnes Kirchhoff, Walter G. Berendsohn, Ulrich Bügel, Fernando Chaves, Cailin Guan, Markus Lindhorst, Dominik Röpert, Eduard Santamaria, Karl-Heinz Steinke, Hangyan Zheng
Moving beyond the box: automating the digitisation of insect collections
Pieter Holtzhausen, Stéfan van der Walt, Alice Heaton, Laurence Livermore, Vladimir Blagoderov, Ben Price, Lawrence Hudson, Vincent Smith
ZooSphere - Development of a software for automated spheric image capturing and interactive 3D visualization of biological collection objects
Martin Pluta, Falko Glöckler, Alexander Kroupa, Bernhard Schurian
Capturing Inventory level information about collections as a step in object to image to data workflows
Paul J Morris, James Hanken, David Lowery, Bertram Ludäscher, James A. Macklin, Robert A Morris, Tianhong Song, Patrick Sweeney
Enriching the legacy literature with OCR corrections and text-mined semantic metadata
Riza Batista-Navarro, Aminul Islam, William Ulate, Jennifer Hammock, Axel Soto, Sophia Ananiadou, Evangelos Milios
Managing Digitization Projects with Biospex
Greg Riccardi, Austin Mast, Elizabeth Ellwood, Robert Bruhn, Jeremy Spinks
Discussion: Access to Digitisation Tools and Methods (data)
Elspeth M Haston, Deborah Paul, Vincent Smith
Optical character recognition (OCR) in linking entomological labels with field notebook data
Tero Mononen, Riitta Tegelberg, Janne Karppinen, Mira Sääskilahti, Hannu Saarenmaa, Tommi Koskinen, Jyrki Muona
ENVIRONMENTS-EOL: identification of Environment Ontology terms in text and the annotation of the Encyclopedia of Life
Evangelos Pafilis, Sune Frankild, Lucia Fanini, Sarah Faulwetter, Christina Pavloudi, Julia Schnetzer, Aikaterini Vasileiadou, Umer Ijaz, Christos Arvanitidis, Robert Stevenson, Lars Juhl Jensen
Discussion: Access to Digitisation Tools and Methods (linking and management)
Elspeth M Haston, Deborah Paul, Vincent Smith

S06. Distributed Open-Source Development of Collection Management Systems (DINA-Consortium)

Markus Skyttner, Ingimar Erlingsson, Ida Li, Karin Karlsson, Stefan Daume, Fredrik Ronquist

S08. Expanding the Usefulness of Literature in Sustaining Biodiversity

Improving discovery of biodiversity literature through integrated services
Carolyn Sheffield
Carolyn Sheffield

S09. Biodiversity data synthesis and discovery at a Tree of Life scale

Next-generation phenomics for the Tree of Life
Carmen Lorena Endara, Carrine E. Blank, John Gordon Burleigh, Andrea Cirranello, Hong Cui, Marymegan Daly, Gail Gasparich, Mariangeles Arce Hernandez, Jed Irvine, Lisa Moore, Thomas G. Dietterich, Jing Liu, Seth Kaufman, Michael Lam, Maureen O'Leary, Maria Passaroti, Javier Robalino, Nancy Simmons, Joan Slonczewski, Dennis Wm. Stevenson, Robert W. Thacker, Edward Theriot, Sinisa Todorovic, Ramona Walls, Paul M. Velazco, Elvis H. Wu, Anna Yu
TraitBank: Integrating Trait Data Across The Tree of Life
Katja Sabine Schulz, Jennifer Hammock, Cynthia Parr
Linking Diverse Data in Studies of Plant Evolution: Case Studies in Progress
Pamela S. Soltis

S11. Citizen science: a growing approach to biodiversity monitoring

CyberTracker and Citizen Science
Louis Wilhelm Liebenberg, Justin Steventon
Tuning the Citizen Science “Instrument” for Gathering Biodiversity Data and Maintaining Data Quality
Robert D. Stevenson, Yurong He, HeeJun Kim, Todd E Suomela

IG/TG07. (Proposed) Interest Group on Data Quality

(Proposed) Interest Group on Data Quality
Antonio Mauro Saraiva, Arthur Chapman

W03. Software Solutions for Data Management

Diversity Workbench – Import Wizards
Markus Weiss, Anton Link, Wolfgang Reichert, Veronica Sanz, Gerhard Rambold, Dagmar Triebel

W05. Building Biodiversity Informatics Standards and Capacity for Citizen Science

Building Biodiversity Informatics Standards and Capacity for Citizen Science
Robert D. Stevenson

LT. Lightning Talks

Article Semanticizer - stitching data mining services into a standalone search appliance
David Peter Shorthouse, Dmitry Mozzherin
There is No Place Like Home: Defining “Habitat” for Biodiversity and Conservation science - Can we develop a research agenda for Habitat Informatics ?
Robert D. Stevenson, Evangelos Pafilis, Carl Nordman, Lesley Sneddon

C01. Contributed Papers Citizen Science & Crowdsourcing

Building the historical biodiversity baseline: Emerging iDigBio resources for onsite and online public participation in the digitization of biodiversity research specimens
Libby Ellwood, Robert Bruhn, Jeremy Spinks, Greg Riccardi, Austin Mast
Emmanouela Panteri, Sarah Faulwetter, Christos Arvanitidis, Thanos Dailianis, George Chatzigeorgiou, Eva Chatzinikolaou, Evangelos Pafilis, Christina Pavloudi, Thomas Uher, Simon D Rycroft, Alexander Kroupa, Vincent Smith, Lyubomir Penev, Edward Baker, Jean-Pierre Feral, David Romain
Pl@ntNet, a citizen science platform dedicated to plant identification and botanical monitoring
Pierre Bonnet, Hervé Goëau, Alexis Joly, Vera Bakić, Souheil Selmi, Julien Champ, Jennifer Carré, Mathias Chouet, Aurélien Peronnet, Samuel Dufour-Kowalski, Antoine Affouard, Julien Barbe, Jean-François Molino, Nozha Boujemaa, Daniel Barthélémy
The 1 Million Treatment Goal: How to create access to taxonomic treatments
Donat Agosti, Terry Catapano, Guido Sautter

C02. Contributed Papers Trait & Ecology & Conservation Informatics

The development of a community agreed thesaurus of plant traits
Marie-Angélique Laporte, Ulrike Stahl, Stefan Klotz, Ingolf Kühn, Lutz Maicher, Eric Garnier, Isabelle Mougenot, Jens Kattge

C03. Contributed Papers Digitization & Capacity Building

Publishing model and data papers: A synergy between a Latin American journal and SiB Colombia
Dairo Escobar, Daniel Amariles, María Fernanda Gómez, Danny Vélez, Néstor Beltrán, Camila Plata, Oscar Duque, Carlos Cubillos, Karen Soacha, Juan Bello

C04. Contributed Papers Emerging Platforms

Linking data, services and communities using Virtual Research Environments (VRE); The Scratchpads example
Dimitrios Koureas, Simon Rycroft, Vince Smith
SiB Colombia: Sharing and accessing biodiversity data
Dairo Escobar, Daniel Amariles, María Fernanda Gómez, Karen Soacha, Néstor Beltrán, Camila Plata, Marcela Delgado, Leonardo Buitrago, Valentina Grajales, Oscar Duque, María Fernanda Cubillos, Hugo Escobar, Carlos Cubillos, Juan Bello

C05. Contributed Papers Technical Topics

Simplifying the mechanics toward building a Biodiversity Knowledge Graph
David Peter Shorthouse, Christian Gendreau
Persistent identifiers for museum specimens in Norway
Dag Endresen, Christian Svindseth

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