General Papers
| Need for Controlled Vocabularies on Intellectual Property Right statements ? | |
| Patricia Mergen, Larissa Smirnova, Jiri Frank |
Posters
| Digital Object Identifiers (DOIs) for the Biodiversity Heritage Library | |
| Martin Kalfatovic, Carolyn Sheffield, William Ulate, Connie Rinaldo, Grace Costantino |
| Linnaeus Next Generation for species information and identification | |
| Wouter Addink, Maarten Schermer, Huub Veldhuijzen, Peter Schalk, Maarten van der Velde |
| Helpdesk and training facilities at the Royal Museum for Central Africa, now EU BON oriented. | |
| Larissa Smirnova, Kim Jacobsen, Patricia Mergen, Franck Theeten, Hannu Saarenmaa |
| DigiWeb – quality driven workflow environment for digitisation of natural history specimens | |
| Tero Mononen, Riitta Tegelberg, Mira Sääskilahti, Markku A. Huttunen, Marko Tähtinen, Hannu Saarenmaa |
| The DINA consortium | |
| Markus Skyttner, Kevin Holston, Ida Li, Ingimar Erlingsson, Stefan Daume, Karin Karlsson, Fredrik Ronquist |
| Predicting local species lists: an example and a challenge | |
| Robert D. Stevenson, Rafer Dannenhauer |
| Crowdsourcing portal for transcription of label information for Norwegian natural history collections | |
| Dag Endresen, Christian Svindseth, Einar Timdal, Eirik Rindal |
| The Crop Ontology: Integrating the Participatory Variety Selection (PVS) | |
| Léo Valette, Shiv Kumar Agrawal, Ramaiah Bhavanasi, Antonio Lopez-Montez, Sidibe Mamourou, Praveen Reddy Teegala, Trushar Shah, Gilles Trouche, Kirsten vom Brocke, Jean-François Rami, Eva Weltzien, Karthika Rajendran, Harold Durufle, Marie-Angélique Laporte, Luca Matteis, Elizabeth Arnaud |
| Centralising thematic (freshwater) biodiversity data using the Darwin Core standard and GBIF’s Integrated Publishing Toolkit (IPT) | |
| Aaike De Wever, Astrid Schmidt-Kloiber, Sylvain Renaudier, Michel Kapel, Robert Vogl, Koen Martens |
| Project Bio-API | |
| Jeroen Snijders, Wouter Addink, Daphne Duin, Ayco Holleman, Wilfred Gerritsen, Ruud Alternburg, Maarten van der Velde |
| Biodiversity and sustainable conservation of the fish fauna and fisheries of the Congolese waters of Lake Albert | |
| Jargy Kambale Soheranda |
| Collecting ideas: We are making an e-book | |
| Soili Stenroos, Vanamo Salo, Hanna Koivula, Dmitry Schigel |
Interest Group
| (Proposed) Interest Group on Data Quality | |
| Antonio Mauro Saraiva, Arthur D. Chapman, Allan Koch Veiga |
S01. Symposium: Biodiversity Informatics workflows and services
| Analytical Workflows for Large Data | |
| Christian Authmann, Christian Beilschmidt, Johannes Drönner, Michael Mattig, Bernhard Seeger |
| Workflow Support for Continuous Data Quality Control in a FilteredPush Network | |
| Bertram Ludaescher, James Hanken, David Lowery, James Macklin, Paul J Morris, Robert Morris, Tianhong Song |
| Scalable and Provenance-Enabled Scientific Workflows for Species Distribution Modeling | |
| Luiz Gadelha, Guilherme Gall, Andrea Sanchez-Tapia, Marinez Ferreira de Siqueira, Jorge Velásquez, Daniel Lopez |
| Biodiversity Data Quality tailored for Scientific Workflows | |
| Christian Gendreau, Allan Koch Veiga, David P. Shorthouse, Antonio Mauro Saraiva |
S02. Symposium: Biodiversity Data Quality - issues, methods and tools
| Data Quality Symposium: introduction and review of activities | |
| Antonio Mauro Saraiva |
| Toward a Conceptual Framework for the Assessment and Management of the Fitness-for-Use of Biodiversity Data | |
| Allan Koch Veiga, Antonio Mauro Saraiva |
| Darwin Core Archive (DwC-A) validation: A New Collaborative Effort | |
| Christian Gendreau, David P. Shorthouse, Tim Robertson, Marie-Élise Lecoq |
| Two approaches to finding botanical duplicate occurrences (and other relations among specimens) in the face of noisy data | |
| Robert A Morris, James Hanken, David B. Lowery, Bertram Ludäscher, James A. Macklin, Chuck McCallum, Paul J. Morris, Tianhong Song |
| Discussion | |
| Antonio Mauro Saraiva |
S03. Standards for mobilising and integrating sample-based data
| Introduction | |
| Hannu Saarenmaa |
S04. Names-based Architecture for Linking Biodiversity Data
| Identifying funding and collaboration opportunities to support the global names e-infrastructure | |
| Dimitris Koureas, Vince Smith |
S05. Access to digitisation tools and methods
| The Open Drawer Project - Providing free access to high resolution images of entomological collection drawers | |
| Alexander Kroupa, Falko Glöckler, Bernhard Schurian, Felix Maier, Stefan Schmidt, Gregor Hagedorn, Christoph Häuser |
| StanDAP-Herb develops a standard process for extracting metadata from digitised herbarium specimens | |
| Agnes Kirchhoff, Walter G. Berendsohn, Ulrich Bügel, Fernando Chaves, Cailin Guan, Markus Lindhorst, Dominik Röpert, Eduard Santamaria, Karl-Heinz Steinke, Hangyan Zheng |
| Moving beyond the box: automating the digitisation of insect collections | |
| Pieter Holtzhausen, Stéfan van der Walt, Alice Heaton, Laurence Livermore, Vladimir Blagoderov, Ben Price, Lawrence Hudson, Vincent Smith |
| ZooSphere - Development of a software for automated spheric image capturing and interactive 3D visualization of biological collection objects | |
| Martin Pluta, Falko Glöckler, Alexander Kroupa, Bernhard Schurian |
| Capturing Inventory level information about collections as a step in object to image to data workflows | |
| Paul J Morris, James Hanken, David Lowery, Bertram Ludäscher, James A. Macklin, Robert A Morris, Tianhong Song, Patrick Sweeney |
| Enriching the legacy literature with OCR corrections and text-mined semantic metadata | |
| Riza Batista-Navarro, Aminul Islam, William Ulate, Jennifer Hammock, Axel Soto, Sophia Ananiadou, Evangelos Milios |
| Managing Digitization Projects with Biospex | |
| Greg Riccardi, Austin Mast, Elizabeth Ellwood, Robert Bruhn, Jeremy Spinks |
| Discussion: Access to Digitisation Tools and Methods (data) | |
| Elspeth M Haston, Deborah Paul, Vincent Smith |
| Optical character recognition (OCR) in linking entomological labels with field notebook data | |
| Tero Mononen, Riitta Tegelberg, Janne Karppinen, Mira Sääskilahti, Hannu Saarenmaa, Tommi Koskinen, Jyrki Muona |
| ENVIRONMENTS-EOL: identification of Environment Ontology terms in text and the annotation of the Encyclopedia of Life | |
| Evangelos Pafilis, Sune Frankild, Lucia Fanini, Sarah Faulwetter, Christina Pavloudi, Julia Schnetzer, Aikaterini Vasileiadou, Umer Ijaz, Christos Arvanitidis, Robert Stevenson, Lars Juhl Jensen |
| Discussion: Access to Digitisation Tools and Methods (linking and management) | |
| Elspeth M Haston, Deborah Paul, Vincent Smith |
S06. Distributed Open-Source Development of Collection Management Systems (DINA-Consortium)
| The DINA Web API | |
| Markus Skyttner, Ingimar Erlingsson, Ida Li, Karin Karlsson, Stefan Daume, Fredrik Ronquist |
S08. Expanding the Usefulness of Literature in Sustaining Biodiversity
| Improving discovery of biodiversity literature through integrated services | |
| Carolyn Sheffield |
| Discussion | |
| Carolyn Sheffield |
S09. Biodiversity data synthesis and discovery at a Tree of Life scale
| Next-generation phenomics for the Tree of Life | |
| Carmen Lorena Endara, Carrine E. Blank, John Gordon Burleigh, Andrea Cirranello, Hong Cui, Marymegan Daly, Gail Gasparich, Mariangeles Arce Hernandez, Jed Irvine, Lisa Moore, Thomas G. Dietterich, Jing Liu, Seth Kaufman, Michael Lam, Maureen O'Leary, Maria Passaroti, Javier Robalino, Nancy Simmons, Joan Slonczewski, Dennis Wm. Stevenson, Robert W. Thacker, Edward Theriot, Sinisa Todorovic, Ramona Walls, Paul M. Velazco, Elvis H. Wu, Anna Yu |
| TraitBank: Integrating Trait Data Across The Tree of Life | |
| Katja Sabine Schulz, Jennifer Hammock, Cynthia Parr |
| Linking Diverse Data in Studies of Plant Evolution: Case Studies in Progress | |
| Pamela S. Soltis |
S11. Citizen science: a growing approach to biodiversity monitoring
| CyberTracker and Citizen Science | |
| Louis Wilhelm Liebenberg, Justin Steventon |
| Tuning the Citizen Science “Instrument” for Gathering Biodiversity Data and Maintaining Data Quality | |
| Robert D. Stevenson, Yurong He, HeeJun Kim, Todd E Suomela |
IG/TG07. (Proposed) Interest Group on Data Quality
| (Proposed) Interest Group on Data Quality | |
| Antonio Mauro Saraiva, Arthur Chapman |
W03. Software Solutions for Data Management
| Diversity Workbench – Import Wizards | |
| Markus Weiss, Anton Link, Wolfgang Reichert, Veronica Sanz, Gerhard Rambold, Dagmar Triebel |
W05. Building Biodiversity Informatics Standards and Capacity for Citizen Science
| Building Biodiversity Informatics Standards and Capacity for Citizen Science | |
| Robert D. Stevenson |
LT. Lightning Talks
| Article Semanticizer - stitching data mining services into a standalone search appliance | |
| David Peter Shorthouse, Dmitry Mozzherin |
| There is No Place Like Home: Defining “Habitat” for Biodiversity and Conservation science - Can we develop a research agenda for Habitat Informatics ? | |
| Robert D. Stevenson, Evangelos Pafilis, Carl Nordman, Lesley Sneddon |
C01. Contributed Papers Citizen Science & Crowdsourcing
| Building the historical biodiversity baseline: Emerging iDigBio resources for onsite and online public participation in the digitization of biodiversity research specimens | |
| Libby Ellwood, Robert Bruhn, Jeremy Spinks, Greg Riccardi, Austin Mast |
| CROWD SOURCING INITIATIVES IN THE MEDITERRANEAN BASIN | |
| Emmanouela Panteri, Sarah Faulwetter, Christos Arvanitidis, Thanos Dailianis, George Chatzigeorgiou, Eva Chatzinikolaou, Evangelos Pafilis, Christina Pavloudi, Thomas Uher, Simon D Rycroft, Alexander Kroupa, Vincent Smith, Lyubomir Penev, Edward Baker, Jean-Pierre Feral, David Romain |
| Pl@ntNet, a citizen science platform dedicated to plant identification and botanical monitoring | |
| Pierre Bonnet, Hervé Goëau, Alexis Joly, Vera Bakić, Souheil Selmi, Julien Champ, Jennifer Carré, Mathias Chouet, Aurélien Peronnet, Samuel Dufour-Kowalski, Antoine Affouard, Julien Barbe, Jean-François Molino, Nozha Boujemaa, Daniel Barthélémy |
| The 1 Million Treatment Goal: How to create access to taxonomic treatments | |
| Donat Agosti, Terry Catapano, Guido Sautter |
C02. Contributed Papers Trait & Ecology & Conservation Informatics
| The development of a community agreed thesaurus of plant traits | |
| Marie-Angélique Laporte, Ulrike Stahl, Stefan Klotz, Ingolf Kühn, Lutz Maicher, Eric Garnier, Isabelle Mougenot, Jens Kattge |
C03. Contributed Papers Digitization & Capacity Building
| Publishing model and data papers: A synergy between a Latin American journal and SiB Colombia | |
| Dairo Escobar, Daniel Amariles, María Fernanda Gómez, Danny Vélez, Néstor Beltrán, Camila Plata, Oscar Duque, Carlos Cubillos, Karen Soacha, Juan Bello |
C04. Contributed Papers Emerging Platforms
| Linking data, services and communities using Virtual Research Environments (VRE); The Scratchpads example | |
| Dimitrios Koureas, Simon Rycroft, Vince Smith |
| SiB Colombia: Sharing and accessing biodiversity data | |
| Dairo Escobar, Daniel Amariles, María Fernanda Gómez, Karen Soacha, Néstor Beltrán, Camila Plata, Marcela Delgado, Leonardo Buitrago, Valentina Grajales, Oscar Duque, María Fernanda Cubillos, Hugo Escobar, Carlos Cubillos, Juan Bello |
C05. Contributed Papers Technical Topics
| Simplifying the mechanics toward building a Biodiversity Knowledge Graph | |
| David Peter Shorthouse, Christian Gendreau |
| Persistent identifiers for museum specimens in Norway | |
| Dag Endresen, Christian Svindseth |
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